Avatar billede ichiban Nybegynder
17. januar 2007 - 16:11 Der er 15 kommentarer

MySQL client ran out of memory

Hej Alle Sammen

Når jeg forsøger at læse fra en tabel, så får jeg "MySQL client ran out of memory". Tabellen er på 35,145,847 records og fylder 6.3 GB. Databasen kører på en HP server med 4 GB ram og en 12 GB swapfil.

Jeg ved at problemet sikkert ligger i en indstilingen eller manglene indstillingen i my.ini.

Så den er her:

# MySQL Server Instance Configuration File
# ----------------------------------------------------------------------
# Generated by the MySQL Server Instance Configuration Wizard
#
#
# Installation Instructions
# ----------------------------------------------------------------------
#
# On Linux you can copy this file to /etc/my.cnf to set global options,
# mysql-data-dir/my.cnf to set server-specific options
# (@localstatedir@ for this installation) or to
# ~/.my.cnf to set user-specific options.
#
# On Windows you should keep this file in the installation directory
# of your server (e.g. C:\Program Files\MySQL\MySQL Server X.Y). To
# make sure the server reads the config file use the startup option
# "--defaults-file".
#
# To run run the server from the command line, execute this in a
# command line shell, e.g.
# mysqld --defaults-file="C:\Program Files\MySQL\MySQL Server X.Y\my.ini"
#
# To install the server as a Windows service manually, execute this in a
# command line shell, e.g.
# mysqld --install MySQLXY --defaults-file="C:\Program Files\MySQL\MySQL Server X.Y\my.ini"
#
# And then execute this in a command line shell to start the server, e.g.
# net start MySQLXY
#
#
# Guildlines for editing this file
# ----------------------------------------------------------------------
#
# In this file, you can use all long options that the program supports.
# If you want to know the options a program supports, start the program
# with the "--help" option.
#
# More detailed information about the individual options can also be
# found in the manual.
#
#
# CLIENT SECTION
# ----------------------------------------------------------------------
#
# The following options will be read by MySQL client applications.
# Note that only client applications shipped by MySQL are guaranteed
# to read this section. If you want your own MySQL client program to
# honor these values, you need to specify it as an option during the
# MySQL client library initialization.
#
[client]

port=3306

[mysql]

default-character-set=latin1


# SERVER SECTION
# ----------------------------------------------------------------------
#
# The following options will be read by the MySQL Server. Make sure that
# you have installed the server correctly (see above) so it reads this
# file.
#
[mysqld]

# The TCP/IP Port the MySQL Server will listen on
port=3306

# Sæt heap size ( Skal kun bruges i forbindelse med import)
max_heap_table_size=2048MB

#Path to installation directory. All paths are usually resolved relative to this.
basedir="C:/Program Files/MySQL/MySQL Server 5.0/"

#Path to the database root
datadir="C:/Program Files/MySQL/MySQL Server 5.0/Data/"

# The default character set that will be used when a new schema or table is
# created and no character set is defined
default-character-set=latin1

# The default storage engine that will be used when create new tables when
default-storage-engine=INNODB

# Set the SQL mode to strict
sql-mode="NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION"

# The maximum amount of concurrent sessions the MySQL server will
# allow. One of these connections will be reserved for a user with
# SUPER privileges to allow the administrator to login even if the
# connection limit has been reached.
max_connections=100

# Query cache is used to cache SELECT results and later return them
# without actual executing the same query once again. Having the query
# cache enabled may result in significant speed improvements, if your
# have a lot of identical queries and rarely changing tables. See the
# "Qcache_lowmem_prunes" status variable to check if the current value
# is high enough for your load.
# Note: In case your tables change very often or if your queries are
# textually different every time, the query cache may result in a
# slowdown instead of a performance improvement.
query_cache_size=0

# The number of open tables for all threads. Increasing this value
# increases the number of file descriptors that mysqld requires.
# Therefore you have to make sure to set the amount of open files
# allowed to at least 4096 in the variable "open-files-limit" in
# section [mysqld_safe]
table_cache=256

# Maximum size for internal (in-memory) temporary tables. If a table
# grows larger than this value, it is automatically converted to disk
# based table This limitation is for a single table. There can be many
# of them.
tmp_table_size=128M

# How many threads we should keep in a cache for reuse. When a client
# disconnects, the client's threads are put in the cache if there aren't
# more than thread_cache_size threads from before. This greatly reduces
# the amount of thread creations needed if you have a lot of new
# connections. (Normally this doesn't give a notable performance
# improvement if you have a good thread implementation.)
thread_cache_size=8

# Fix to add full text search for more than the default 4 chars
ft_min_word_len=1

# Temp dir
tmpdir = E://MySQL

# General Query Log
log=D:/MySQLLogs/general-log.sql


#*** MyISAM Specific options

# The maximum size of the temporary file MySQL is allowed to use while
# recreating the index (during REPAIR, ALTER TABLE or LOAD DATA INFILE.
# If the file-size would be bigger than this, the index will be created
# through the key cache (which is slower).
myisam_max_sort_file_size=100G

# If the temporary file used for fast index creation would be bigger
# than using the key cache by the amount specified here, then prefer the
# key cache method. This is mainly used to force long character keys in
# large tables to use the slower key cache method to create the index.
myisam_max_extra_sort_file_size=100G

# If the temporary file used for fast index creation would be bigger
# than using the key cache by the amount specified here, then prefer the
# key cache method. This is mainly used to force long character keys in
# large tables to use the slower key cache method to create the index.
myisam_sort_buffer_size=256M

# Size of the Key Buffer, used to cache index blocks for MyISAM tables.
# Do not set it larger than 30% of your available memory, as some memory
# is also required by the OS to cache rows. Even if you're not using
# MyISAM tables, you should still set it to 8-64M as it will also be
# used for internal temporary disk tables.
key_buffer_size=64M

# Size of the buffer used for doing full table scans of MyISAM tables.
# Allocated per thread, if a full scan is needed.
read_buffer_size=256K
read_rnd_buffer_size=1024K

# This buffer is allocated when MySQL needs to rebuild the index in
# REPAIR, OPTIMZE, ALTER table statements as well as in LOAD DATA INFILE
# into an empty table. It is allocated per thread so be careful with
# large settings.
sort_buffer_size=1024K


#*** INNODB Specific options ***
innodb_data_home_dir="D:/MySQLData/"

# Use this option if you have a MySQL server with InnoDB support enabled
# but you do not plan to use it. This will save memory and disk space
# and speed up some things.
#skip-innodb

# Additional memory pool that is used by InnoDB to store metadata
# information. If InnoDB requires more memory for this purpose it will
# start to allocate it from the OS. As this is fast enough on most
# recent operating systems, you normally do not need to change this
# value. SHOW INNODB STATUS will display the current amount used.
innodb_additional_mem_pool_size=64M

# If set to 1, InnoDB will flush (fsync) the transaction logs to the
# disk at each commit, which offers full ACID behavior. If you are
# willing to compromise this safety, and you are running small
# transactions, you may set this to 0 or 2 to reduce disk I/O to the
# logs. Value 0 means that the log is only written to the log file and
# the log file flushed to disk approximately once per second. Value 2
# means the log is written to the log file at each commit, but the log
# file is only flushed to disk approximately once per second.
innodb_flush_log_at_trx_commit=1

# The size of the buffer InnoDB uses for buffering log data. As soon as
# it is full, InnoDB will have to flush it to disk. As it is flushed
# once per second anyway, it does not make sense to have it very large
# (even with long transactions).
innodb_log_buffer_size=3499K

# InnoDB, unlike MyISAM, uses a buffer pool to cache both indexes and
# row data. The bigger you set this the less disk I/O is needed to
# access data in tables. On a dedicated database server you may set this
# parameter up to 80% of the machine physical memory size. Do not set it
# too large, though, because competition of the physical memory may
# cause paging in the operating system. Note that on 32bit systems you
# might be limited to 2-3.5G of user level memory per process, so do not
# set it too high.
innodb_buffer_pool_size=256M

# Size of each log file in a log group. You should set the combined size
# of log files to about 25%-100% of your buffer pool size to avoid
# unneeded buffer pool flush activity on log file overwrite. However,
# note that a larger logfile size will increase the time needed for the
# recovery process.
innodb_log_file_size=32M

# Number of threads allowed inside the InnoDB kernel. The optimal value
# depends highly on the application, hardware as well as the OS
# scheduler properties. A too high value may lead to thread thrashing.
innodb_thread_concurrency=16

# Fix to add full text search for more than the default 4 chars, section 2
[myisamchk]
ft_min_word_len=1


Hvis du har en idé, så sig frem!
Mvh.
Jens
Avatar billede kalp Novice
17. januar 2007 - 16:15 #1
Avatar billede arne_v Ekspert
17. januar 2007 - 18:16 #2
PHP eller ?
Avatar billede ichiban Nybegynder
17. januar 2007 - 18:49 #3
kalp: Jeg har læst manualen ;)

arne_v: ja, men kaldene fra php går fint igennem. Det er også kun meget små mængder data. Det er de store kald, hvor man beder om f.eks. 2 GB's data. Der er der problemet opstår. Problemet opstår i databasen. Jeg kunne genskabe problemet gennem konsol klienten. Hvis jeg laver en "select * from tabel", så går den ned efter måske 20 sek.
Avatar billede arne_v Ekspert
17. januar 2007 - 19:14 #4
aendrer det noget hvis du i PHP koden retter mysql_queryt til mysql_unbuffered_query
for de "store queries" ?

(jeg mener at du konfigurere mysql command line utility i mysql.ini, men det
loeser ikke problemet i PHP)
Avatar billede ichiban Nybegynder
17. januar 2007 - 19:20 #5
Så fik jeg ikke gjort mig selv klar. beklager...
Der er ingen problemer med php. Fejlen opstår ikke i php kald, da de kald er meget små.
Det er kun kald fra andre programmer gennem f.eks. odbc.
Avatar billede arne_v Ekspert
21. januar 2007 - 04:15 #6
med ODBC hvilken værdi for option angiver du i connection string ?
Avatar billede arne_v Ekspert
21. januar 2007 - 04:19 #7
3145736 lyder god (8 + 1048576 + 2097152)
Avatar billede ichiban Nybegynder
24. januar 2007 - 11:52 #8
Hej Arne

Beklager jeg er ikke haft meget tid de sidste par dage.
Jeg tror ikke det er et problem med ODBC, fordi jeg kan genskabe fejlen gennem mysql promten(mysql.exe)direkte på serveren. Med hensyn til ODBC, så er den blot installeret på serveren. Så der er ingen ODBC connection string. I ODBC har jeg dog markeret flagene Don't Optimize Column Width og Return Matching Rows.

Mvh.
Jens
Avatar billede ichiban Nybegynder
24. januar 2007 - 12:08 #9
Fejlen jeg får er denne:
C:\Program Files\MySQL\MySQL Server 5.0\bin>mysql -u root -p
Enter password: ********
Welcome to the MySQL monitor.  Commands end with ; or \g.
Your MySQL connection id is 9572 to server version: 5.0.22-community-nt-log

Type 'help;' or '\h' for help. Type '\c' to clear the buffer.

mysql> use dbh;
Database changed
mysql> select * from rod;
mysql: Out of memory (Needed 2857400 bytes)
ERROR 2008 (HY000): MySQL client ran out of memory
mysql>
Avatar billede ichiban Nybegynder
24. januar 2007 - 12:12 #10
Min tanke, som jeg vil prøve i aften, er at begrænse den tilgængelige ram angivet i my.ini. Når MySQL stødder på et loftet angivet i my.ini vil en evt. temp tabel blive konverteret til en disk tabel. ikke sandt ?
Derefter kan jeg så prøve at sætte ram værdierne i vejret, og se hvornår jeg når loftet og får en fejl.
Avatar billede ichiban Nybegynder
24. januar 2007 - 13:58 #11
Jeg har forsøgt at nedsætte ram forbruget i en ny my.ini. Men jeg for stadig den samme fejl.

Den nye my.ini:

# MySQL Server Instance Configuration File
# ----------------------------------------------------------------------
# Generated by the MySQL Server Instance Configuration Wizard
#
#
# Installation Instructions
# ----------------------------------------------------------------------
#
# On Linux you can copy this file to /etc/my.cnf to set global options,
# mysql-data-dir/my.cnf to set server-specific options
# (@localstatedir@ for this installation) or to
# ~/.my.cnf to set user-specific options.
#
# On Windows you should keep this file in the installation directory
# of your server (e.g. C:\Program Files\MySQL\MySQL Server X.Y). To
# make sure the server reads the config file use the startup option
# "--defaults-file".
#
# To run run the server from the command line, execute this in a
# command line shell, e.g.
# mysqld --defaults-file="C:\Program Files\MySQL\MySQL Server X.Y\my.ini"
#
# To install the server as a Windows service manually, execute this in a
# command line shell, e.g.
# mysqld --install MySQLXY --defaults-file="C:\Program Files\MySQL\MySQL Server X.Y\my.ini"
#
# And then execute this in a command line shell to start the server, e.g.
# net start MySQLXY
#
#
# Guildlines for editing this file
# ----------------------------------------------------------------------
#
# In this file, you can use all long options that the program supports.
# If you want to know the options a program supports, start the program
# with the "--help" option.
#
# More detailed information about the individual options can also be
# found in the manual.
#
#
# CLIENT SECTION
# ----------------------------------------------------------------------
#
# The following options will be read by MySQL client applications.
# Note that only client applications shipped by MySQL are guaranteed
# to read this section. If you want your own MySQL client program to
# honor these values, you need to specify it as an option during the
# MySQL client library initialization.
#
[client]

port=3306

[mysql]

default-character-set=latin1


# SERVER SECTION
# ----------------------------------------------------------------------
#
# The following options will be read by the MySQL Server. Make sure that
# you have installed the server correctly (see above) so it reads this
# file.
#
[mysqld]

# The TCP/IP Port the MySQL Server will listen on
port=3306

# Sæt heap size
max_heap_table_size=16MB

#Path to installation directory. All paths are usually resolved relative to this.
basedir="C:/Program Files/MySQL/MySQL Server 5.0/"

#Path to the database root
datadir="C:/Program Files/MySQL/MySQL Server 5.0/Data/"

# The default character set that will be used when a new schema or table is
# created and no character set is defined
default-character-set=latin1

# The default storage engine that will be used when create new tables when
default-storage-engine=INNODB

# Set the SQL mode to strict
sql-mode="NO_AUTO_CREATE_USER,NO_ENGINE_SUBSTITUTION"

# The maximum amount of concurrent sessions the MySQL server will
# allow. One of these connections will be reserved for a user with
# SUPER privileges to allow the administrator to login even if the
# connection limit has been reached.
max_connections=50

# Query cache is used to cache SELECT results and later return them
# without actual executing the same query once again. Having the query
# cache enabled may result in significant speed improvements, if your
# have a lot of identical queries and rarely changing tables. See the
# "Qcache_lowmem_prunes" status variable to check if the current value
# is high enough for your load.
# Note: In case your tables change very often or if your queries are
# textually different every time, the query cache may result in a
# slowdown instead of a performance improvement.
query_cache_size=32MB

# The number of open tables for all threads. Increasing this value
# increases the number of file descriptors that mysqld requires.
# Therefore you have to make sure to set the amount of open files
# allowed to at least 4096 in the variable "open-files-limit" in
# section [mysqld_safe]
table_cache=256

# Maximum size for internal (in-memory) temporary tables. If a table
# grows larger than this value, it is automatically converted to disk
# based table This limitation is for a single table. There can be many
# of them.
tmp_table_size=16M

# How many threads we should keep in a cache for reuse. When a client
# disconnects, the client's threads are put in the cache if there aren't
# more than thread_cache_size threads from before. This greatly reduces
# the amount of thread creations needed if you have a lot of new
# connections. (Normally this doesn't give a notable performance
# improvement if you have a good thread implementation.)
thread_cache_size=8

# Fix to add full text search for more than the default 4 chars
ft_min_word_len=1

# Temp dir
tmpdir = E://MySQL

# General Query Log
log=D:/MySQLLogs/general-log.sql


#*** MyISAM Specific options

# The maximum size of the temporary file MySQL is allowed to use while
# recreating the index (during REPAIR, ALTER TABLE or LOAD DATA INFILE.
# If the file-size would be bigger than this, the index will be created
# through the key cache (which is slower).
myisam_max_sort_file_size=10G

# If the temporary file used for fast index creation would be bigger
# than using the key cache by the amount specified here, then prefer the
# key cache method. This is mainly used to force long character keys in
# large tables to use the slower key cache method to create the index.
myisam_max_extra_sort_file_size=10G

# If the temporary file used for fast index creation would be bigger
# than using the key cache by the amount specified here, then prefer the
# key cache method. This is mainly used to force long character keys in
# large tables to use the slower key cache method to create the index.
myisam_sort_buffer_size=256M

# Size of the Key Buffer, used to cache index blocks for MyISAM tables.
# Do not set it larger than 30% of your available memory, as some memory
# is also required by the OS to cache rows. Even if you're not using
# MyISAM tables, you should still set it to 8-64M as it will also be
# used for internal temporary disk tables.
key_buffer_size=32M

# Size of the buffer used for doing full table scans of MyISAM tables.
# Allocated per thread, if a full scan is needed.
read_buffer_size=256K
read_rnd_buffer_size=1024K

# This buffer is allocated when MySQL needs to rebuild the index in
# REPAIR, OPTIMZE, ALTER table statements as well as in LOAD DATA INFILE
# into an empty table. It is allocated per thread so be careful with
# large settings.
sort_buffer_size=1024K


#*** INNODB Specific options ***
innodb_data_home_dir="D:/MySQLData/"

# Use this option if you have a MySQL server with InnoDB support enabled
# but you do not plan to use it. This will save memory and disk space
# and speed up some things.
#skip-innodb

# Additional memory pool that is used by InnoDB to store metadata
# information. If InnoDB requires more memory for this purpose it will
# start to allocate it from the OS. As this is fast enough on most
# recent operating systems, you normally do not need to change this
# value. SHOW INNODB STATUS will display the current amount used.
innodb_additional_mem_pool_size=64M

# If set to 1, InnoDB will flush (fsync) the transaction logs to the
# disk at each commit, which offers full ACID behavior. If you are
# willing to compromise this safety, and you are running small
# transactions, you may set this to 0 or 2 to reduce disk I/O to the
# logs. Value 0 means that the log is only written to the log file and
# the log file flushed to disk approximately once per second. Value 2
# means the log is written to the log file at each commit, but the log
# file is only flushed to disk approximately once per second.
innodb_flush_log_at_trx_commit=1

# The size of the buffer InnoDB uses for buffering log data. As soon as
# it is full, InnoDB will have to flush it to disk. As it is flushed
# once per second anyway, it does not make sense to have it very large
# (even with long transactions).
innodb_log_buffer_size=3499K

# InnoDB, unlike MyISAM, uses a buffer pool to cache both indexes and
# row data. The bigger you set this the less disk I/O is needed to
# access data in tables. On a dedicated database server you may set this
# parameter up to 80% of the machine physical memory size. Do not set it
# too large, though, because competition of the physical memory may
# cause paging in the operating system. Note that on 32bit systems you
# might be limited to 2-3.5G of user level memory per process, so do not
# set it too high.
innodb_buffer_pool_size=256M

# Size of each log file in a log group. You should set the combined size
# of log files to about 25%-100% of your buffer pool size to avoid
# unneeded buffer pool flush activity on log file overwrite. However,
# note that a larger logfile size will increase the time needed for the
# recovery process.
innodb_log_file_size=32M

# Number of threads allowed inside the InnoDB kernel. The optimal value
# depends highly on the application, hardware as well as the OS
# scheduler properties. A too high value may lead to thread thrashing.
innodb_thread_concurrency=16

# Fix to add full text search for more than the default 4 chars, section 2
[myisamchk]
ft_min_word_len=1
Avatar billede arne_v Ekspert
25. januar 2007 - 01:54 #12
memory på client side styres jo af client config

MySQL command line utility styres af mysql.ini

ODBC styres af din connection string (eller hvis du bruger DSN af opsætningen af DSN)

derfor mener jeg at de skal løses hver for sig

og jeg antager at det er vigtige at få løst problemet i din app som bruger ODBC
fremfor i MySQL command line utility
Avatar billede ichiban Nybegynder
25. januar 2007 - 09:48 #13
Er der mon et eller andet, som jeg ikke har indset....
Styrer my.ini ikke MySQL databasen ? Jeg tænkte at siden jeg kunne reproducere den samme fejl i MySQL command line utility, var det en fejl i min MySQL opsætning. Men det er måske ikke tilfældet ? Hvor bliver jeg klogere! Dejligt. :)
Jeg prøver "3145736" i løbet af i dag.
Avatar billede arne_v Ekspert
25. januar 2007 - 15:24 #14
MySQL er client server kommunikation over TCP/IP

mysql.ini styrer mysqld paa server siden

og mysql command line client paa client siden

den styrer ikke (saa vidt jeg ved) ODBC driver paa server siden
Avatar billede ichiban Nybegynder
25. januar 2007 - 15:47 #15
Jeg har læst og prøvet en del i løbet af i dag. Det ser ud til at der er en bug i ODBC driveren. Den kommer når flaget Don't Cache Result(1048576) er sat. Så for jeg ikke adgang. Den kommer ikke engang op og sprøger efter login/password. Jeg tror det er samme bug som http://bugs.mysql.com/bug.php?id=4657.
Avatar billede Ny bruger Nybegynder

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